science

Open Chemistry project upholds mission of unorganization, The Blue Obelisk

to compete or collaborate

Chemistry is not the most open field of scientific endeavor; in fact, as I began working more in the area (coming from a background in physics), I was surprised with the norms in the field. As a PhD student way back in 2003, I simply wanted to draw a 3D molecular structure on my operating system of choice (Linux), and be able to save an image for a paper/poster discussing my research.

This proved to be nearly impossible, and in 2005 a group of like-minded researchers got together at a meeting of the American Chemical Society and formed an unorganization: The Blue Obelisk (named after their meeting place in San Diego).

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Big data in modern biology

open science beaker

There is now no question that genomics, the study of the genomes of organisms and a field that includes intensive efforts to determine the entire DNA sequence of organisms, has joined the big data club. The development of prolific new DNA sequencing technologies is forcing biologists to embrace the dizzying terms of terabytes, petabytes and, looming on the horizon, exabytes.

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Do open source competitions really impact the movement?

your two cents

Sunglass, a platform for collaborating on 3D projects in real time, and DIYRockets, a global space company helping humanity establish a civilazation in space by building an open space frontier, are partnering in an effort to build rocket engines. » Read more

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A neuro-hacker tells us why opening up scientific research is critical

open source why

Pete Herzog began an article he wrote for opensource.com last year about Hacker Highschool by saying:

It might sound strange, but every industry and profession could benefit from an employee as creative, resourceful, and motivated as a hacker. 

You see, Pete is not only motivated by what open source and open thinking can do to change our world, he is moved by it. He tell us that his passions change every few years, but always revolve around open source. 

Right now, he's working on an open source project called: Smarter Safer Better, a study and research (what he calls, neuro-hacking) on trust. Read more about his work on the subject: What They Don't Teach You in "Thinking Like the Enemy" Classes and Mind Control.

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New leaders in science are those who share

fortune cookie

The Obama administration recently responded to a petition asking the government to "require free access over the Internet to scientific journal articles arising from taxpayer-funded research."

I first heard about the petition on Google+, and am very proud to be signature #52. Back then 25,000 signatures seemed like a tall order for what is a somewhat niche area. In the end, the petition gained over 65,000 signatures and an official response from the White House. The Open Science Federation posted a screen capture of the 25,000th signature landmark on June 3, 2012. John Wilibanks started the petition with signature #1.

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Creative Commons license liberates knowledge of ESIP community

lightning talk

Erin Robinson, the Information and Virtual Community Director for the Foundation for Earth Science, the management arm of the Federation of Earth Science Information Partners (@ESIPFed), says that earth science matters to all of us. For example, when Hurrican Sandy devastated areas of the country, responders needed information on flood zones and what hospitals were available.

ESIP is a cross-cutting community of application developers,
researchers, and big data centers comprised of about 1000 technology practitioners working together on common issues around earth science data and information. In order to support member contributions and collaborative work, ESIP built a non-traditional publishing platform, the ESIP Commons, which organizes member-produced content. Beyond structured input, the ESIP Commons also provides the option to license under Creative Commons and a suggested citation allowing community recognition and easy material reuse. Recently, the Data Citation Guidelines for Data Providers and Archives were picked up and resued by the National Oceanic and Atmospheric Administration (NOAA) and the National Science Foundation (NSF)—a huge success.

The Drupal installation profile for the ESIP Commons will be available on Github in the coming weeks. And if you are interested in repurposing the Commons for your own group, please contact Erin at erinrobinson@esipfed.org.

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Event report: FOSDEM introduces science-focused devroom

on the scene

FOSDEM, held annually in Brussels, Belgium, is a free event for open source communities to meet, share ideas, and collaborate. It offers a mix of focused devrooms and themed main track talks, with no requirement for registration. It has a reputation of being highly developer-focused, this year brought together over 5,000 geeks from around the world.

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A time for action: One student's commitment to free and open access

good bad ugly

Information is power. But like all power, there are those who want to keep it for themselves.—Aaron Swartz

I have been a PhD student for less than two years. On the other hand, for six years, I have been a member of the free culture movement, which emphasizes the importance of access to and openness of technology and information. » Read more

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Values of science at odds with desire to turn it into a commercial product

creativity

Scientific software tools have long lived in the conflict zone between open source ideals and proprietary exploitation. The values of science (openness, transparency, and free exchange) are at odds with the desires of individuals and organizations to transition scientific tools to a commercial product. This has been a problem in neuropsychology and neuroscience for decades, and extends outside the bounds of software.

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Progress of science thanks to software being open source

mMass software code

Over the last months, I became more and more aware of the "open" movement. "Open" as in open access, open source, open data, open science. » Read more

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